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PITX1 gene
Reviewed by Medicinsk Expert•Last updated: 2026-10-22•Gene

PITX1 gene

The PITX1 gene provides essential instructions for the development of the legs and feet, and mutations in this gene are linked to various limb and skeletal disorders.

Normal Function

The PITX1 gene provides instructions for making a protein that plays a critical role in the development of the legs and feet. The protein acts as a transcription factor, which means that it binds to specific regions of DNA and helps control the activity of particular genes. Specifically, the PITX1 protein regulates the activity of genes that direct the development of the bones and tissues in the legs, knees, ankles, and feet.

The PITX1 protein is also found in the embryonic structures called branchial arches that give rise to tissues in the face and neck and in the developing pituitary gland, which is a hormone-producing gland located at the base of the brain. Researchers suspect that the PITX1 protein may play a role in the formation of the pituitary gland and in the formation of certain tissues that are derived from the branchial arches, such as the roof of the mouth, the jaw, and parts of the inner ear.

Health Conditions Related to Genetic Changes

Liebenberg syndrome

Changes in the long arm (q) of chromosome 5 that affect the PITX1 gene cause Liebenberg syndrome. This condition is characterized by the abnormal development of the elbows, wrists, and hands. Affected individuals typically have joint deformities called contractures that limit the movement of these structures.

People with Liebenberg syndrome have deletions, insertions, or rearrangements of the long arm of chromosome 5 that affect regions of DNA known as regulatory elements. These regulatory elements help turn genes on (enhancers) or off (repressors) during development. The chromosome changes that cause Liebenberg syndrome typically move an enhancer that activates the genes that are involved in the development of the arms and hands closer to the PITX1 gene.

As a result of these changes, the PITX1 gene is abnormally active when the arms and hands are developing. Because the PITX1 protein normally directs the development of the legs and feet, the bones and tissues in the arms and hands develop more like those in the legs and feet.

Other disorders

Changes in the PITX1 gene have been found to cause an inward- and upward-turning foot (clubfoot) with or without the absence or severe shortening of a bone in the lower leg called the tibia (tibial hemimelia). Some individuals also have extra toes (polydactyly) arranged such that the outer toes are mirror images of the inner toes; this condition is called mirror-image polydactyly. Unlike in Liebenberg syndrome, these features are caused by changes in the PITX1 gene itself. These changes cause cells to produce fewer functional PITX1 proteins, which disrupts the normal development of the legs, feet, and toes.

Other Names for This Gene

  • BFT
  • paired-like homeodomain 1
  • paired-like homeodomain transcription factor 1
  • pituitary homeobox 1
  • pituitary otx-related factor
  • POTX
  • PTX1

Frequently Asked Questions

Patients with PITX1-related conditions often present with joint contractures that limit movement of the elbows, wrists, and hands. The hands may appear shortened or have abnormal finger positioning, and the elbows may be fixed in a flexed or extended position. X‑ray imaging typically shows shortened bones and abnormal joint angles.
While the primary phenotype involves limb anomalies, PITX1 is also expressed in embryonic branchial arches and the developing pituitary. Rarely, patients may have subtle facial asymmetry, jaw abnormalities, or pituitary hormone deficiencies, but these are uncommon and usually not the main clinical concern.
Early intervention with physical therapy and occupational therapy can help maintain range of motion. Serial casting or splinting may be used to gradually stretch contracted joints. In severe cases, surgical procedures such as tendon lengthening, osteotomies, or joint releases can restore mobility, but outcomes vary and require a multidisciplinary team.
The diagnosis starts with a detailed physical exam and imaging studies such as X‑ray or MRI. Genetic confirmation is obtained by sequencing the PITX1 gene and its regulatory regions on chromosome 5q, often using a targeted gene panel or whole‑exome sequencing. Chromosomal microarray can also detect deletions or rearrangements affecting regulatory elements.
Source: MedlinePlus, National Library of Medicine

MedlinePlus brings together authoritative health information from the National Library of Medicine (NLM), the National Institutes of Health (NIH), and other government agencies and health-related organizations.

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