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SLC25A1 gene
Reviewed by Medicinsk Expert•Last updated: 2026-10-22•Gene

SLC25A1 gene

The SLC25A1 gene provides instructions for making a protein essential for mitochondrial energy production and cellular regulation.

Normal Function

The SLC25A1 gene provides instructions for making a protein that is found in mitochondria, which are the energy-producing centers in cells. The SLC25A1 protein transports a molecule called citrate out of mitochondria in exchange for another molecule called malate, which is transported in. Within mitochondria, both citrate and malate participate in reactions that produce energy for cell activities. Citrate is transported out of mitochondria because it also has important functions in other parts of the cell. In particular, citrate is involved in the production of fats (lipids) and the regulation of glycolysis, which is another critical energy-producing process within cells.

Health Conditions Related to Genetic Changes

2-hydroxyglutaric aciduria

At least 12 mutations in the SLC25A1 gene have been found to cause a form of 2-hydroxyglutaric aciduria called combined D,L-2-hydroxyglutaric aciduria (D,L-2-HGA). This condition causes severe brain abnormalities that become apparent in early infancy.

Each of the known SLC25A1 gene mutations greatly reduces the function of the SLC25A1 protein. As a result, citrate and malate cannot be transported into and out of mitochondria, which disrupts energy production within cells. Through processes that are not fully understood, the lack of citrate and malate transport allows other compounds to build up abnormally within cells. These compounds include D-2-hydroxyglutarate and L-2-hydroxyglutarate, which at high levels can damage cells and lead to cell death. Brain cells appear to be the most vulnerable to the toxic effects of these compounds, which may explain why the signs and symptoms of D,L-2-HGA primarily involve the brain. Researchers suspect that an imbalance of other molecules, particularly citrate, also contributes to the severe signs and symptoms of combined D,L-2-HGA.

Other Names for This Gene

  • citrate transport protein
  • CTP
  • D2L2AD
  • SEA
  • SLC20A3
  • solute carrier family 20 (mitochondrial citrate transporter), member 3
  • solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1
  • tricarboxylate carrier protein
  • tricarboxylate transport protein, mitochondrial
  • TXTP_HUMAN

Frequently Asked Questions

Infants with this condition typically present with severe developmental delays, including an inability to sit or walk independently. Other common neurological signs include hypotonia (low muscle tone), seizures, and microcephaly (an abnormally small head size). As the child grows, they may experience progressive brain atrophy, which can lead to worsening motor skills, speech difficulties, and cognitive impairment. The brain is particularly vulnerable because the toxic buildup of hydroxyglutarate compounds damages neurons most severely in this organ. How does the SLC25A1 protein function in the cell, and why does its failure cause toxic buildup?::The SLC25A1 protein acts as a transporter in the mitochondria, moving citrate out of the energy-producing organelle and malate in. When the protein is defective due to a mutation, this exchange stops. This disruption prevents the normal metabolic flow, causing alternative metabolic pathways to become overactive. As a result, byproducts called D-2-hydroxyglutarate and L-2-hydroxyglutarate accumulate to toxic levels within the cells. These compounds interfere with normal cellular function and can trigger cell death, particularly in sensitive tissues like the brain. Is there a specific treatment or cure for combined D,L-2-hydroxyglutaric aciduria?::Currently, there is no cure for this condition, and treatment is primarily supportive and focuses on managing symptoms. This includes physical therapy to maintain mobility, occupational therapy for daily living skills, and anti-seizure medications if epilepsy is present. Research is ongoing to understand the metabolic pathways involved, but no specific therapy has yet been proven to reverse the neurological damage or lower the levels of toxic hydroxyglutarate compounds in the body. How is this specific form of 2-hydroxyglutaric aciduria diagnosed?::Diagnosis is typically confirmed through a combination of biochemical testing and genetic analysis. Urine and blood tests can detect elevated levels of both D-2-hydroxyglutarate and L-2-hydroxyglutarate, which distinguishes this condition from other forms of hydroxyglutaric aciduria that may only involve one form. Definitive diagnosis is achieved through genetic testing that identifies biallelic pathogenic variants in the SLC25A1 gene. Brain imaging, such as MRI, is also used to assess the extent of brain abnormalities and atrophy.
Source: MedlinePlus, National Library of Medicine

MedlinePlus brings together authoritative health information from the National Library of Medicine (NLM), the National Institutes of Health (NIH), and other government agencies and health-related organizations.

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