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SPTLC1 gene
Reviewed by Medicinsk Expert•Last updated: 2026-10-22•Gene

SPTLC1 gene

The SPTLC1 gene provides instructions for a subunit of the serine palmitoyltransferase enzyme, which is vital for the production of sphingolipids in cell membranes.

Normal Function

The SPTLC1 gene provides instructions for making one part (subunit) of an enzyme called serine palmitoyltransferase (SPT). The SPT enzyme is involved in making certain fats called sphingolipids, which are important components of cell membranes that play a role in many cell functions. The SPT enzyme initiates the first step of sphingolipid production, combining serine and palmitoyl CoA to form ketodihydrosphingosine. Within the cell, the SPT enzyme is mainly found on the endoplasmic reticulum.

Health Conditions Related to Genetic Changes

Hereditary sensory neuropathy type IA

At least nine mutations in the SPTLC1 gene have been found to cause hereditary sensory neuropathy type IA. This condition is characterized by nerve abnormalities in the legs and feet (peripheral neuropathy), a reduced ability to feel pain, and muscle weakness that can impair mobility.

SPTLC1 gene mutations reduce the amount of functional SPTLC1 subunit produced, resulting in an SPT enzyme with altered activity. This altered enzyme produces molecules called deoxysphingoid bases, which it does not normally produce. When accumulated, these deoxysphingoid bases are toxic to neurons. The gradual destruction of nerve cells caused by the buildup of these toxic molecules results in the loss of sensation and muscle weakness characteristic of this condition.

Charcot-Marie-Tooth disease

MedlinePlus Genetics provides information about Charcot-Marie-Tooth disease.

Other Names for This Gene

  • hLCB1
  • LBC1
  • LCB1
  • long chain base biosynthesis protein 1
  • serine C-palmitoyltransferase
  • serine palmitoyltransferase subunit 1
  • serine palmitoyltransferase, long chain base subunit 1
  • serine-palmitoyl-CoA transferase 1
  • SPT1
  • SPTC1_HUMAN
  • SPTI

Frequently Asked Questions

The SPTLC1 gene is part of the enzyme complex that starts the production of sphingolipids, which are essential fats for cell membranes. When the SPTLC1 gene is mutated, the enzyme complex malfunctions and begins producing abnormal molecules called deoxysphingoid bases instead of the normal sphingolipids. These deoxysphingoid bases accumulate in the body and are toxic to nerve cells (neurons). Over time, this toxicity causes the gradual death of sensory and motor nerves, leading to the loss of sensation, pain, and muscle strength seen in hereditary sensory neuropathy type IA. How is hereditary sensory neuropathy type IA typically diagnosed, and are there specific tests to confirm an SPTLC1 mutation?::Diagnosis usually begins with a clinical evaluation of symptoms such as loss of pain sensation, foot deformities, and muscle weakness. A nerve conduction study may show reduced nerve function. Definitive diagnosis is achieved through genetic testing that identifies specific mutations in the SPTLC1 gene. Additionally, biochemical testing can be performed to measure elevated levels of deoxysphingoid bases in the blood, which serves as a biomarker for the condition and helps confirm the diagnosis before or alongside genetic results. What are the early warning signs of SPTLC1-related neuropathy in children, and how does the condition progress?::Early signs in children often include an unsteady gait, frequent stumbling, or a high-stepping walk due to muscle weakness in the legs. A hallmark sign is a reduced ability to feel pain, which may lead to unnoticed injuries, blisters, or ulcers on the feet. As the condition progresses, the loss of sensation and muscle weakness typically move up the legs and may affect the hands. The progression is generally slow and lifelong, with mobility becoming increasingly impaired over decades, but it is not typically life-threatening. Is there a cure for hereditary sensory neuropathy type IA, and what management strategies are recommended?::There is currently no cure for hereditary sensory neuropathy type IA, but management focuses on preventing complications and maintaining mobility. Key strategies include regular foot inspections to detect and treat injuries early, wearing properly fitted shoes to prevent ulcers, and using orthotics or braces to support weak muscles. Physical therapy is essential to maintain strength and balance. Genetic counseling is also recommended for families to understand the inheritance pattern and assess risks for future children.
Source: MedlinePlus, National Library of Medicine

MedlinePlus brings together authoritative health information from the National Library of Medicine (NLM), the National Institutes of Health (NIH), and other government agencies and health-related organizations.

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