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USB1 gene
Reviewed by Medicinsk Expert•Last updated: 2026-10-22•Gene

USB1 gene

The USB1 gene provides instructions for an enzyme that protects U6 RNA, and mutations in this gene are associated with poikiloderma with neutropenia.

Normal Function

The USB1 gene provides instructions for making an enzyme that functions as an RNA exonuclease. RNA exonucleases cut off (cleave) building blocks called nucleotides one at a time from molecules of RNA. This process helps stabilize the RNA and protects it from damage.

Specifically, the USB1 enzyme protects a small RNA molecule called U6, which is an essential component of a complex called a spliceosome. The USB1 enzyme also helps transport (chaperones) U6 to the spliceosome and helps it attach (bind) to the proteins in the complex. Spliceosomes process RNA molecules called messenger RNAs (mRNAs) by recognizing and removing regions known as introns and splicing the mRNA molecules back together to provide the blueprint for making proteins.

Different versions (isoforms) of the USB1 enzyme are produced in different tissues, where they play various roles. In blood-forming tissues, the USB1 enzyme is thought to be important for the maturation of neutrophils, a type of white blood cell involved in the immune system. In the skin, the USB1 enzyme is found in pigment-producing cells (melanocytes), cells in the outer layer of the skin (keratinocytes), and structural cells (fibroblasts).

Health Conditions Related to Genetic Changes

Poikiloderma with neutropenia

At least 24 mutations in the USB1 gene have been identified in people with poikiloderma with neutropenia (PN). This condition involves a group of skin abnormalities called poikiloderma and a persistent shortage (deficiency) of neutrophils (chronic neutropenia).

The USB1 gene mutations that cause PN are thought to lead to an enzyme whose function is impaired. As a result of the dysfunctional USB1 exonuclease, the U6 RNA is not protected from damage and not correctly chaperoned to the spliceosomes, leading to impairment of key biological functions. The existence of tissue-specific isoforms of the enzyme could help explain why this disorder mainly affects the skin and immune system.

Other Names for This Gene

  • C16orf57
  • chromosome 16 open reading frame 57
  • hMPN1: mutated in PN1
  • U six biogenesis 1
  • U6 small nuclear RNA biogenesis phosphodiesterase 1
  • U6 snRNA biogenesis 1

Frequently Asked Questions

Poikiloderma with neutropenia (PN) usually presents in early childhood, often before the age of five. The initial sign is often a persistent, low-grade neutropenia detected during routine blood work or after recurrent infections. The skin condition, poikiloderma, typically appears later and involves a combination of redness (erythema), scaling, and mottled pigmentation changes (both light and dark patches) on the skin. The skin changes often start on the face and upper trunk and may spread to the limbs. The condition is generally non-progressive in terms of life expectancy, but the skin changes and immune deficiency persist. How does a mutation in the USB1 gene impact the immune system, and what infections are patients most at risk for?::The USB1 enzyme is crucial for the maturation of neutrophils, a type of white blood cell that fights bacterial and fungal infections. Mutations in this gene lead to chronic neutropenia, meaning the body has a persistently low count of these cells. As a result, patients are at increased risk for recurrent bacterial infections, particularly those affecting the skin (such as cellulitis or abscesses), the respiratory tract (pneumonia or sinusitis), and the gastrointestinal tract. While the immune system is compromised, patients with PN generally do not have the severe, life-threatening viral or fungal infections seen in other primary immunodeficiencies. Can the skin abnormalities associated with USB1 mutations be treated, and is there a cure for the condition?::There is currently no cure for the underlying genetic defect in the USB1 gene. Treatment is supportive and focuses on managing symptoms. For the skin changes, there is no specific medication to reverse poikiloderma, but dermatological care can help manage scaling and irritation. For the neutropenia, treatment is usually reserved for severe or recurrent infections and may include antibiotics, antifungals, or growth factors like granulocyte colony-stimulating factor (G-CSF) to boost neutrophil counts. Bone marrow transplantation has been explored but is not a standard cure due to the complexity of the condition and potential risks. How is poikiloderma with neutropenia diagnosed, and what specific tests are required to confirm a USB1 mutation?::Diagnosis typically begins with a clinical evaluation of the characteristic skin changes and a complete blood count (CBC) revealing chronic neutropenia. To confirm the diagnosis, genetic testing is required. This usually involves sequencing the USB1 gene to identify specific pathogenic mutations. In some cases, if the mutation is not found through standard sequencing, more advanced genomic analysis may be needed. A dermatologist and a hematologist or immunologist usually work together to manage the diagnosis and care plan.
Source: MedlinePlus, National Library of Medicine

MedlinePlus brings together authoritative health information from the National Library of Medicine (NLM), the National Institutes of Health (NIH), and other government agencies and health-related organizations.

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